chronobiologyGene Rev-Erb-α’s role on the stability of the circadian rhythmsWe can analyze the role of Rev-Erb-α on the stability of circadian oscillations using a model consisting of 19 ODEs. The parameter vsB describes the coupling of the protein REV-ERB-α on the other cellular circadian clock components. Using the same values of the parameters as in Figure 8 of the same paper, we can analyze the bifurcation due to the coupling parameter vsB. A bifurcation point close to vsB*=1.61 nM/h exists at which oscillations change from damped to a limit cycle. Figure 1 shows the amplitude of oscillations of Bmal1 mRNA at various values around the bifurcation point. This result implies that the type of bifurcation is that of supercritical Hopf bifurcation, which also predicts that the period of oscillations is unaffected by the bifurcation [result not shown]. This result may be experimentally confirmed by manipulating in a continuous fashion the coupling strength of REV-ERBα on the transcription of Bmal1. If the coupling strength is not strong enough—i.e. below the bifurcation point—then the period of the circadian rhythm will not change but the rhythmicity of Bmal1 mRNA will weaken and eventually be undetectable.
Phase Response Curves: Elucidating the dynamics of coupled oscillatorsARTICLE REVIEW Abstract Error/Inaccuracy Remarks
Suprachiasmatic NucleusThe mammalian circadian clock is believed to be performed by a hypothalamic tissue called suprachiasmatic nucleus (SCN) which is called as such because it resides right next to the optic chiasm. It is composed of tens of thousands of interconnected neurons, a fraction of which each exhibit circadian oscillation in electrical activity and expression of some genes. Even though these neurons do not have similar period, their interaction causes them to synchronize with each other thereby producing a stable circadian period of the whole SCN. The mechanism behind the individual oscillations and how they interact with each other is still not completely known. Watch the following 2-min lecture on the SCN from the Howard Hughes Medical Institute.
Limit cycle model is not enoughRecent article (PDF) by Alexander Skupin and Michael Falcke showed that calcium ions are not cellular oscillators. Their result also proved that limit cycle oscillations are not enough to describe experimental data, suggesting that spatial components must be accounted for in the model. Click the picture below to read the caption.
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